Morevna Changeset - bacd3b2d37aa

Changeset - bacd3b2d37aa

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Laman - 7 years ago 2017-11-01 23:50:10

optimized hashtree batch update

5 files changed with 68 insertions and 11 deletions:

src/hashtree.py

src/netnode.py

src/tests/__init__.py

src/tests/test_hashtree.py

src/tests/test_overall.py

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src/hashtree.py

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 import hashlib
 import collections
 import hashlib
 import os
 from datetime import datetime
 from util import Progress
 def hashBlock(data):
 	return hashlib.sha256(data).digest()[-HashTree.HASH_LEN:]
 class HashTree:
 	HASH_LEN=16 # bytes
 	BLOCK_SIZE=4096 # bytes
 	## Prepares a tree containing leafCount leaves.
 	def __init__(self,leafCount):
 		self.store=[b""]*(leafCount*2-1)
 		self.leafStart=leafCount-1
 		self.leafCount=leafCount
 		self._index=self.leafStart
 	@classmethod
 	def fromFile(cls,filename):
 		with open(filename,"rb") as f:
 			stat=os.fstat(f.fileno())
 			size=stat.st_size # !! symlinks
 			leafCount=(size-1)//HashTree.BLOCK_SIZE+1 # number of leaf blocks
 			res=cls(leafCount)
 			print(datetime.now(), "hashing file:")
 			progress=Progress(leafCount)
 			for i in range(leafCount):
 				data=f.read(HashTree.BLOCK_SIZE)
 				res.insertLeaf(hashBlock(data))
 				progress.p(i)
 			progress.done()
 		res.buildTree()
 		return res
 	@classmethod
 	def load(cls,filename):
 		with open(filename,"rb") as f:
 			stat=os.fstat(f.fileno())
 			size=stat.st_size
 			nodeCount=size//HashTree.HASH_LEN
 			res=cls((nodeCount+1)//2)
 			for i in range(nodeCount):
 				res.store[i]=f.read(HashTree.HASH_LEN)
 		return res
 	def save(self,filename):
 		with open(filename,"wb") as f:
 			for h in self.store:
 				f.write(h)
 	## Inserts a leaf at the first empty position.
+	#
 	#	Useful and used only during the tree construction.
 	def insertLeaf(self,h):
 		self.store[self._index]=h
 		self._index+=1
 	## Updates a hash stored in the leaf.
 	def updateLeaf(self,index,h):
 		if index<self.leafStart: raise IndexError()
 		self.store[index]=h
 		self.updateNode((index-1)//2)
 	## Updates the node at index and all its ancestors.
 	def updateNode(self,index):
 		while index>=0:
 			self.store[index]=hashBlock(self.store[index*2+1]+self.store[index*2+2])
 			index=(index-1)//2
 	## Fast construction of the tree over the leaves. O(n).
 	def buildTree(self):
 		print(datetime.now(), "building tree:")
 		progress=Progress(-1, self.leafStart-1)
 		for i in range(self.leafStart-1,-1,-1):
 			self.store[i]=hashBlock(self.store[i*2+1]+self.store[i*2+2])
 			progress.p(i)
 		progress.done()
 	## Update faster than repeated insertLeaf.
 	def batchUpdate(self,keysHashes):
 		queue=collections.deque()
 		for (k,v) in sorted(keysHashes):
 			self.store[k]=v
 			parentK=(k-1)//2
 			if len(queue)==0 or queue[-1]!=parentK:
 				queue.append(parentK)
 		while len(queue)>0:
 			k=queue.pop()
 			self.store[k]=hashBlock(self.store[k*2+1]+self.store[k*2+2])
 			parentK=(k-1)//2
 			if (len(queue)==0 or queue[0]!=parentK) and k!=0:
 				queue.appendleft(parentK)

src/netnode.py

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@@ @@ -4,51 +4,50 @@ import logging as log @@
 from networkers import NetworkReader,NetworkWriter
 from hashtree import HashTree
 class FailedConnection(Exception): pass
 class BaseConnection: # abstract
 	def __init__(self):
 		self._socket=None
 		self.incoming=None
 		self.outcoming=None
 	def createNetworkers(self):
 		fr=self._socket.makefile(mode="rb")
 		fw=self._socket.makefile(mode="wb")
 		self.incoming=NetworkReader(fr)
 		self.outcoming=NetworkWriter(fw)
 	def __enter__(self):
 		return self.incoming,self.outcoming
 	def __exit__(self, exc_type, exc_val, exc_tb):
 		try:
 			self._socket.shutdown(socket.SHUT_RDWR)
 			self._socket.close()
 		except OSError:
 			log.warning("broken connection")
 class NetNode:
 	def __init__(self,filename,treeFile=""):
 		self._incoming=None
 		self._outcoming=None
 		self._filename=filename
 		self._treeFile=treeFile
 		if treeFile:
 			self._tree=HashTree.load(treeFile)
 		else:
 			self._tree=HashTree.fromFile(filename)
 		self._newLeaves=dict()
 	def _updateTree(self):
 		log.info("updating hash tree...")
 		for (k,v) in self._newLeaves.items():
 			self._tree.updateLeaf(k, v)
 		self._tree.batchUpdate(self._newLeaves.items())
 		self._tree.save(self._treeFile)

src/tests/__init__.py

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 import sys
 class RedirectedOutput():
 	_stdout=None
 	@classmethod
 	def setUpClass(cls):
 		cls._stdout=sys.stdout
 		sys.stdout=open("/tmp/morevna-stdout.log",mode="a")
 	@classmethod
 	def tearDownClass(cls):
 		sys.stdout.close()
 		sys.stdout=cls._stdout

src/tests/test_hashtree.py

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@@ new file 100644 @@
 import random
 from unittest import TestCase
 from hashtree import HashTree
 from . import RedirectedOutput
 random.seed(17)
 def buildTree(leaves):
 	tree=HashTree(len(leaves))
 	for l in leaves:
 		tree.insertLeaf(l)
 	tree.buildTree()
 	return tree
 class TestMorevna(RedirectedOutput,TestCase):
 	def test_batchUpdate(self):
 		leaves=[b"a" for i in range(8)]
 		t1=buildTree(leaves)
 		keys=list(range(8))
 		for i in range(8):
 			random.shuffle(keys)
 			for k in keys[:i+1]:
 				leaves[k]=bytes([random.randrange(256)])
 			t2=buildTree(leaves)
 			t1.batchUpdate((k+t1.leafStart,leaves[k]) for k in keys[:i+1])
 			self.assertEqual(t1.store,t2.store)

src/tests/test_overall.py

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 import os
 import sys
 import shutil
 import hashlib
 import multiprocessing
 from logging import FileHandler
 from unittest import TestCase
 import config
 from hashtree import HashTree
 from client import Client, Connection as ClientConnection
 from server import Miniserver
 from . import RedirectedOutput
 config.logger.removeHandler(config.handler)
 handler=FileHandler("/tmp/morevna.log")
 handler.setFormatter(config.formatter)
 config.logger.addHandler(handler)
 config.batchSize=8
 dataDir=os.path.join(config.directory,"src/tests/data")
 filename=os.path.join(dataDir,"test.img")
 def compareFiles(f1,f2):
 	with open(f1,mode="rb") as f:
 		h2=hashlib.sha256(f.read()).hexdigest()
 	with open(f2,mode="rb") as f:
 		h=hashlib.sha256(f.read()).hexdigest()
 	return (h,h2)
 class TestMorevna(TestCase):
+class TestMorevna(RedirectedOutput,TestCase):
 	_stdout=None
 	@classmethod
 	def setUpClass(cls):
 		cls._stdout=sys.stdout
 		sys.stdout=open("/tmp/morevna-stdout.log",mode="a")
 	def setUp(self):
 		src=os.path.join(dataDir,"test1.img")
 		shutil.copyfile(src,filename)
 	@classmethod
 	def tearDownClass(cls):
 		super().tearDownClass()
 		os.remove(filename)
 		sys.stdout.close()
 		sys.stdout=cls._stdout
 	def test_build(self):
 		treeFile=os.path.join(dataDir,"test.bin")
 		refFile=os.path.join(dataDir,"test1.bin")
 		tree=HashTree.fromFile(os.path.join(dataDir,"test1.img"))
 		tree.save(treeFile)
 		self.assertEqual(*compareFiles(refFile,treeFile))
 		os.remove(treeFile)
 	def test_push(self):
 		ms=Miniserver(filename)
 		p=multiprocessing.Process(target=ms.serve)
 		p.start()
 		for clientFile in ("test2.img","test3.img","test4.img"):
 			clientFile=os.path.join(dataDir,clientFile)
 			c=Client(clientFile)
 			with ClientConnection("127.0.0.1",config.port) as con:
 				c.setConnection(con)
 				blocksToTransfer=c.negotiate()
 				c.sendData(blocksToTransfer)
 			self.assertEqual(*compareFiles(clientFile,filename))
 		p.terminate()
 		p.join()
 	def test_pull(self):
 		serverFile=os.path.join(dataDir,"test3.img")
 		ms=Miniserver(serverFile)
 		p=multiprocessing.Process(target=ms.serve)
 		p.start()
 		c=Client(filename)
 		with ClientConnection("127.0.0.1",config.port) as con:
 			c.setConnection(con)
 			blocksToTransfer=c.negotiate()
 			c.pullData(blocksToTransfer)
 		self.assertEqual(*compareFiles(serverFile,filename))
 		p.terminate()
 		p.join()

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